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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4905600_4932683_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4905600 - 4932683
Intron Length:
27084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CAATGGTTAATT
Flanking Amino Acid:
GPNSPTVKMKDGLVIPLVEL
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.5
31.6
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
78.3
0.64
0.9
72.7
37.5
Minor 5ss
31.6
-2.1
3.2
38.8
46.5
Minor BPS
47.1
-0.1
2.4
65.45
45.4

Associated Gene:

Gene:
ZSWIM8
Ensembl Gene ID:
ENSAPLG00000007548
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007864
4904910 - 4969437
64528