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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4934104_4939123_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4934104 - 4939123
Intron Length:
5020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGAATTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGAATTTTAACA
Flanking Amino Acid:
VRAVKDPLQIGFHLSATVVP
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
70.8
0.47
1
65.9
44
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
65.9
0.49
1.3
69.39
36.5

Associated Gene:

Gene:
ZSWIM8
Ensembl Gene ID:
ENSAPLG00000007548
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007864
4904910 - 4969437
64528