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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4943771_4944760_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4943771 - 4944760
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTTG
5'SS Class:
weak_major
3'SS Sequence:
TTCTTGTGTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATCTGCAAAACC
Flanking Amino Acid:
TAINTVCGAPDPTAGPSASD
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
69.7
43.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
68.1
0.41
1.2
67.1
43
Minor 5ss
60.6
0.36
2.4
73.2
43.7
Minor BPS
45.7
-0.3
2.3
61.3
44

Associated Gene:

Gene:
ZSWIM8
Ensembl Gene ID:
ENSAPLG00000007548
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007864
4904910 - 4969437
64528