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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4944882_4945242_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4944882 - 4945242
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATCC
Flanking Amino Acid:
KFCGPSPVVFSDVNSMYLSS
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.7
0.67
0.8
73.9
35.2
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
63.2
0.39
1.8
78.26
37.5

Associated Gene:

Gene:
ZSWIM8
Ensembl Gene ID:
ENSAPLG00000007548
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007864
4904910 - 4969437
64528