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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4946507_4949486_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4946507 - 4949486
Intron Length:
2980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGCTTTCTAACC
Flanking Amino Acid:
AVLDPTISPQRRRDLCSQLR
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.4
0.71
0.7
80.8
24.4
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
57.4
0.21
1.7
67.01
38.8

Associated Gene:

Gene:
ZSWIM8
Ensembl Gene ID:
ENSAPLG00000007548
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007864
4904910 - 4969437
64528