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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4950487_4952249_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4950487 - 4952249
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
ATTACCATATGT
Flanking Amino Acid:
KPLEQENRMEILFACAEALY
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
87.6
0.85
0.6
83.5
25
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
47.6
-0.1
2.2
72.32
44.1

Associated Gene:

Gene:
ZSWIM8
Ensembl Gene ID:
ENSAPLG00000007548
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007864
4904910 - 4969437
64528