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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4954931_4955811_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4954931 - 4955811
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGGCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCTTTTCATC
Flanking Amino Acid:
LGFEAAVAALGMKTTVSEAE
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
100
1.24
0.5
100
0
Major PPT
72.4
0.5
0.9
66.2
35.9
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
50.7
0
1.7
63.56
36.4

Associated Gene:

Gene:
ZSWIM8
Ensembl Gene ID:
ENSAPLG00000007548
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007864
4904910 - 4969437
64528