Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4955937_4957742_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4955937 - 4957742

Intron Length:

1806

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCTC

5'SS Class:

strong_major

3'SS Sequence:

CTTGCTGTTAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGGAAA

U12 Branch Point Sequence:

TTGCTGTTAAAG

Flanking Amino Acid:

YKDDQSKLKKILDKLLDRES

Intron Amino Acid Position:

1004

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.7

0.82

0.9

72.2

39.5

Major BPS

45.2

-0.3

1.4

41.5

Major PPT

0.38

1.1

66.4

38.7

Minor 5ss

-1.5

3.2

50.1

46.5

Minor BPS

47.7

-0.3

2.2

57.5

Associated Gene:

Gene:

ZSWIM8

Ensembl Gene ID:

ENSAPLG00000007548

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007864

4904910 - 4969437

64528