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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4957975_4958714_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4957975 - 4958714
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TAATGTTTACCA
Flanking Amino Acid:
PENFVEKSAQESSQRPPCEP
Intron Amino Acid Position:
1081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
39.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.7
0.62
0.9
72.7
36.6
Minor 5ss
39.2
-1.2
3.1
48.2
47.4
Minor BPS
50.6
0.02
2
64.97
41.6

Associated Gene:

Gene:
ZSWIM8
Ensembl Gene ID:
ENSAPLG00000007548
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007864
4904910 - 4969437
64528