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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4960289_4961024_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4960289 - 4961024
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTACAGCA
5'SS Class:
major
3'SS Sequence:
CTTGTACTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGTAC
U12 Branch Point Sequence:
TTCTCTTGTACT
Flanking Amino Acid:
TYSSHVSWITGQAMEIGSAA
Intron Amino Acid Position:
1303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
60.8
38.2
Major BPS
49.7
-0
1.4
52.7
42.9
Major PPT
72.8
0.51
0.8
70.3
35.3
Minor 5ss
32.6
-2
3.2
40.7
45
Minor BPS
60.5
0.41
1.8
80.62
41.2

Associated Gene:

Gene:
ZSWIM8
Ensembl Gene ID:
ENSAPLG00000007548
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007864
4904910 - 4969437
64528