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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_496264_498094_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
496264 - 498094
Intron Length:
1831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTAACTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AATTTGTGAACT
Flanking Amino Acid:
CSLFSEEDAKILEYLNDLKQ
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
72.5
0.51
1
67.9
42.5
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
53.7
0.19
2.1
76.27
40

Associated Gene:

Gene:
MINPP1
Ensembl Gene ID:
ENSAPLG00000019644
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032689
478658 - 504554
25897