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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4978686_4978863_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4978686 - 4978863
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTTCTTTTACG
Flanking Amino Acid:
GRKYPDMDSSSRLFLRDFYR
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.8
32
Major BPS
74.2
0.6
1
67
39.4
Major PPT
78
0.63
0.8
73.1
30.8
Minor 5ss
31.1
-2.2
2.7
37.5
40.1
Minor BPS
73.2
0.59
1.6
79.44
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007976
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008309
4978560 - 5000084
21525