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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4978967_4980459_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4978967 - 4980459
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATCTTCTAAACA
Flanking Amino Acid:
TPLFNYTQALRFDEAKGFWC
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
78.6
37.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.5
0.69
0.9
77.2
37
Minor 5ss
32.5
-2
3.5
47.3
48.3
Minor BPS
65
0.47
1.7
72.86
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007976
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008309
4978560 - 5000084
21525