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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4985627_4986430_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4985627 - 4986430
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TAATGCTTAATC
Flanking Amino Acid:
FPQEKNPLWQNPCDDKRHKD
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
79.2
0.66
0.9
73.2
36.9
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
66.1
0.48
1.7
72.48
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007976
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008309
4978560 - 5000084
21525