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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_499162_499286_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
499162 - 499286
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCCA
5'SS Class:
major
3'SS Sequence:
TTTCTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAGCAC
U12 Branch Point Sequence:
CGGCGCTGAGCA
Flanking Amino Acid:
LGPSLSLGGDEAEIEVNDAL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
58.9
41.8
Major BPS
45.3
-0.2
1.4
51.4
43.9
Major PPT
86.4
0.82
0.8
80.9
31.1
Minor 5ss
33.2
-1.9
3
40.8
45
Minor BPS
41.1
-0.6
2
46.46
42.8

Associated Gene:

Gene:
MINPP1
Ensembl Gene ID:
ENSAPLG00000019644
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032689
478658 - 504554
25897