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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4993458_4993777_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4993458 - 4993777
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTGTTTTTACGC
Flanking Amino Acid:
LGFSGKFYHTGTDEEDEGDD
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75.1
0.57
0.8
69.7
31.1
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
47.9
-0.1
1.9
57.6
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007976
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008309
4978560 - 5000084
21525