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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4993866_4999091_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4993866 - 4999091
Intron Length:
5226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATCC
5'SS Class:
strong_major
3'SS Sequence:
TTAATCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTCCTTTAATC
Flanking Amino Acid:
GTRMKVSDVEALLSTQNKLR
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
71.9
32.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
64.8
0.33
1
59.8
40.5
Minor 5ss
38.6
-1.3
3.1
51.6
45.1
Minor BPS
79.9
0.92
1
83.67
28.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007976
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008309
4978560 - 5000084
21525