Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5145186_5147455_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5145186 - 5147455

Intron Length:

2270

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGC|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

TTTTGTTCAGTT

Flanking Amino Acid:

DQALKHPWVCQRSTVASMMH

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.3

76.2

39.9

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

39.6

-1.2

3.4

53.7

43.8

Minor BPS

48.9

-0

2.1

75.73

41.8

Associated Gene:

Gene:

CAMK2G

Ensembl Gene ID:

ENSAPLG00000008750

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009161

5117244 - 5220529

103286