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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5155360_5157713_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5155360 - 5157713
Intron Length:
2354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTCCTTTTATT
Flanking Amino Acid:
AREYYSEADASHCIHQILES
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
61.8
0.45
1.6
76.99
39.9

Associated Gene:

Gene:
CAMK2G
Ensembl Gene ID:
ENSAPLG00000008750
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009161
5117244 - 5220529
103286