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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5218741_5220464_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5218741 - 5220464
Intron Length:
1724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGGAGC
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCCTCTTTATTT
Flanking Amino Acid:
DEYQLYEELGKGAFSVVRRC
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.7
43.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.1
0.83
0.7
86.1
27.7
Minor 5ss
33.3
-1.9
3.4
42.5
38.9
Minor BPS
63.1
0.49
1.6
74.81
43.2

Associated Gene:

Gene:
CAMK2G
Ensembl Gene ID:
ENSAPLG00000008750
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009161
5117244 - 5220529
103286