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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5290854_5291578_R

Intron Information:

Intron Rank:
133554
Intron Class:
major
Intron Phase:
Intron Coordinates:
5290854 - 5291578
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGTGTTGT
5'SS Class:
major
3'SS Sequence:
GTTATGTTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTATGTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
0.9
69.3
37.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72.6
0.51
1
70.4
44.4
Minor 5ss
42.7
-0.8
2.8
55
44.5
Minor BPS
47.3
-0.2
2.3
64.31
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019120
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038473
5281566 - 5291637
10072