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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5294607_5294760_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5294607 - 5294760
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTGCCTTTAATT
Flanking Amino Acid:
KHYRPSHKHKDCHCLNGGTC
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
85.3
32.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.2
0.84
0.7
81.7
29
Minor 5ss
39.9
-1.1
2.8
46.6
41.8
Minor BPS
76.3
0.9
1.1
85.09
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009852
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010261
5293365 - 5299693
6329