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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5294866_5295358_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5294866 - 5295358
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
TGTGGTAGAAGT
Flanking Amino Acid:
EGYGGLHCEIDDDSTCYTGN
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69
38.3
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
36.4
-1.5
3.7
54.5
49.7
Minor BPS
38.6
-0.7
2.2
57.99
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009852
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010261
5293365 - 5299693
6329