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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5295525_5295759_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5295525 - 5295759
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTATCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTCCTGTATCT
Flanking Amino Acid:
QLGLGKHKYCRNPNGRSRPW
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
78.7
0.64
0.9
69.5
41.4
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
48.3
-0
2.2
72.72
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009852
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010261
5293365 - 5299693
6329