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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5295846_5295926_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5295846 - 5295926
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GAATGAAATGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
AATATCTGAATG
Flanking Amino Acid:
QETPCNVDKCDLNDIFLTER
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
50.3
0.01
1.1
42
42
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
53.2
-0
1.5
56.58
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009852
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010261
5293365 - 5299693
6329