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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5296141_5296760_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5296141 - 5296760
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TACTTTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
ATTACTTTCACT
Flanking Amino Acid:
VLTAAHCFYDPSKRRPRTSA
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
67.4
44
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
75.2
0.57
0.9
73.8
35.5
Minor 5ss
38.2
-1.3
3.3
53.8
43.6
Minor BPS
65
0.55
1.8
82.96
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009852
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010261
5293365 - 5299693
6329