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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5296916_5297772_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5296916 - 5297772
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCTCTCTGACT
Flanking Amino Acid:
DETGGNENDIALVRIRTASG
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84.1
0.77
0.6
84.1
23.8
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
65.8
0.58
1.7
83.75
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009852
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010261
5293365 - 5299693
6329