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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5298659_5299498_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5298659 - 5299498
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
CCTAATTTACTC
Flanking Amino Acid:
DSLWATDACKGDSGGPMVCE
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
83
0.74
0.8
80.8
31.1
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
45.4
-0.3
1.8
51
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009852
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010261
5293365 - 5299693
6329