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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_532016_545147_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
532016 - 545147
Intron Length:
13132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTTTGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTTTTTATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.3
63.9
42.8
Major BPS
80
0.75
1
78.6
31
Major PPT
94.7
1.01
0.5
91.9
19.2
Minor 5ss
37.3
-1.4
3
51.5
44.7
Minor BPS
66.5
0.51
1.5
77.98
32.4

Associated Gene:

Gene:
SGMS1
Ensembl Gene ID:
ENSAPLG00000002477
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032790
531787 - 603178
71392