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Intron Name: Anas_platyrhynchos_platyrhynchos_6_5346102_5366623_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5346102 - 5366623

Intron Length:

20522

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

ATGTTCTAAATC

Flanking Amino Acid:

VQAAVSNLVRVGKETVQTTE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

68.8

43.8

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

86.5

0.82

0.7

81.2

23.9

Minor 5ss

29.2

-2.4

2.5

25.2

36.6

Minor BPS

60.5

0.31

1.6

67.71

38.6

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039245

5345934 - 5406580

60647

ENSAPLT00000010396

5345934 - 5406580

60647