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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5375292_5377016_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5375292 - 5377016
Intron Length:
1725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTCATCTAATA
Flanking Amino Acid:
DLLLTFDEAEVRKIIRVCKG
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83
0.74
0.7
81.5
29.7
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
48.3
-0.1
1.8
62.29
38.1

Associated Gene:

Gene:
VCL
Ensembl Gene ID:
ENSAPLG00000009928
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010396
5345934 - 5406580
60647
ENSAPLT00000039245
5345934 - 5406580
60647