Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5377126_5379645_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5377126 - 5379645

Intron Length:

2520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGATTT

5'SS Class:

major

3'SS Sequence:

TTTAATCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

ATTGCTTTAATC

Flanking Amino Acid:

LVTYTKNLGPGMTKMAKMID

Intron Amino Acid Position:

167

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.1

75.4

34.8

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

80.5

0.69

0.8

78.2

35.8

Minor 5ss

46.3

-0.4

2.8

65.6

45.6

Minor BPS

72.4

0.68

1.3

76.18

34.5

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039245

5345934 - 5406580

60647

ENSAPLT00000010396

5345934 - 5406580

60647