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Intron Name: Anas_platyrhynchos_platyrhynchos_6_5379769_5381447_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5379769 - 5381447

Intron Length:

1679

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTTTTT

5'SS Class:

strong_major

3'SS Sequence:

GGTATTTTCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTTTTCTAATC

Flanking Amino Acid:

VKELLPVLISAMKIFVTTKN

Intron Amino Acid Position:

208

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

82.4

30.8

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

74.9

0.56

68.2

42.2

Minor 5ss

58.1

0.27

2.3

39.6

Minor BPS

66.1

0.48

1.6

78.18

31.2

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039245

5345934 - 5406580

60647

ENSAPLT00000010396

5345934 - 5406580

60647