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Intron Name: Anas_platyrhynchos_platyrhynchos_6_5388305_5389515_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5388305 - 5389515

Intron Length:

1211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAATCTA

5'SS Class:

strong_major

3'SS Sequence:

TCCTCTTGGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

CTGAGCTGAATT

Flanking Amino Acid:

MTDQLADLRARGQGATPMAM

Intron Amino Acid Position:

341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

80.4

34.2

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

0.45

68.1

37.5

Minor 5ss

37.2

-1.5

3.1

49.8

46.4

Minor BPS

48.3

-0

1.9

65.17

45.6

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039245

5345934 - 5406580

60647

ENSAPLT00000010396

5345934 - 5406580

60647