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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5389958_5391166_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5389958 - 5391166
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TTTAAATCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAT
Flanking Amino Acid:
LTAKLSDLRRHGKGDSPEAR
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.3
0.55
0.9
70.7
39.6
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
74.5
0.85
1.2
85.98
33.4

Associated Gene:

Gene:
VCL
Ensembl Gene ID:
ENSAPLG00000009928
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039245
5345934 - 5406580
60647
ENSAPLT00000010396
5345934 - 5406580
60647