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Intron Name: Anas_platyrhynchos_platyrhynchos_6_5391358_5393159_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5391358 - 5393159

Intron Length:

1802

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCATTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TGTATGTTAATG

Flanking Amino Acid:

DNPTVDDRGVGQAAIRGLVA

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.3

1.11

0.7

90.5

20.5

Major BPS

84.4

0.85

34.5

Major PPT

79.4

0.66

0.8

74.4

29.1

Minor 5ss

34.4

-1.8

3.3

48.7

47.5

Minor BPS

49.7

-0.1

2.1

60.2

42.1

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039245

5345934 - 5406580

60647

ENSAPLT00000010396

5345934 - 5406580

60647