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Intron Name: Anas_platyrhynchos_platyrhynchos_6_5393360_5393887_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5393360 - 5393887

Intron Length:

528

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAATC

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTTTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTATCAT

U12 Branch Point Sequence:

TGTTTTTTGAAG

Flanking Amino Acid:

IAAQLQDSLKDLKARMQEAM

Intron Amino Acid Position:

582

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

81.4

30.4

Major BPS

70.5

0.51

1.3

41.2

Major PPT

76.8

0.6

78.6

33.6

Minor 5ss

37.4

-1.4

3.2

51.9

44.9

Minor BPS

58.5

0.12

1.5

63.56

38.5

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039245

5345934 - 5406580

60647

ENSAPLT00000010396

5345934 - 5406580

60647