Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5394017_5395059_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5394017 - 5395059

Intron Length:

1043

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TTCTGACAAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

AGGTTTTTAAAT

Flanking Amino Acid:

APSDTPNREEVFDERAANFE

Intron Amino Acid Position:

625

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.3

1.16

0.7

93.2

21.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

60.7

0.24

56.2

38.3

Minor 5ss

-2.4

3.8

41.8

44.8

Minor BPS

62.4

0.47

1.4

71.81

39.1

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039245

5345934 - 5406580

60647

ENSAPLT00000010396

5345934 - 5406580

60647