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Intron Name: Anas_platyrhynchos_platyrhynchos_6_5395210_5395886_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5395210 - 5395886

Intron Length:

677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGCTTT

5'SS Class:

weak_major

3'SS Sequence:

TTTTCATTCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TGTTACTTAATT

Flanking Amino Acid:

VKSARELTPQVVSAARILLR

Intron Amino Acid Position:

675

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.2

72.6

39.2

Major BPS

100

1.24

0.5

100

Major PPT

81.4

0.71

0.7

77.1

30.4

Minor 5ss

57.9

0.27

2.4

73.9

42.6

Minor BPS

78.1

0.96

1.4

90.08

33.6

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039245

5345934 - 5406580

60647

ENSAPLT00000010396

5345934 - 5406580

60647