Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5395996_5396982_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5395996 - 5396982

Intron Length:

987

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTAG

5'SS Class:

major

3'SS Sequence:

ACTTTTATCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TGTTGTTAAACT

Flanking Amino Acid:

QWIDNVEKMTGLVDEAIDTK

Intron Amino Acid Position:

711

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

38.3

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

0.54

0.8

66.8

38.7

Minor 5ss

35.4

-1.7

3.3

45.9

49.3

Minor BPS

57.7

0.32

2.1

80.14

42.2

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039245

5345934 - 5406580

60647

ENSAPLT00000010396

5345934 - 5406580

60647