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Intron Name: Anas_platyrhynchos_platyrhynchos_6_5397286_5397857_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5397286 - 5397857

Intron Length:

572

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

AATTTTTGTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

ATGCTATTAATC

Flanking Amino Acid:

KAVAGNISDPGLQKSFLDSG

Intron Amino Acid Position:

812

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

84.3

33.3

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

79.4

0.66

77.7

40.7

Minor 5ss

38.3

-1.3

3.4

54.5

43.9

Minor BPS

54.9

0.13

1.6

63.04

36.3

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010396

5345934 - 5406580

60647

ENSAPLT00000039245

5345934 - 5406580

60647