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Intron Name: Anas_platyrhynchos_platyrhynchos_6_5397983_5398321_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5397983 - 5398321

Intron Length:

339

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTACCTTTCTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TTGTACTGAATA

Flanking Amino Acid:

PPPPDLEQLHLTDELAPPKP

Intron Amino Acid Position:

854

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

77.1

31.3

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

77.7

0.62

0.8

77.1

31.3

Minor 5ss

35.4

-1.7

3.2

46.1

42.2

Minor BPS

62.9

0.4

1.6

73.4

38.4

Associated Gene:

Gene:

VCL

Ensembl Gene ID:

ENSAPLG00000009928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039245

5345934 - 5406580

60647

ENSAPLT00000010396

5345934 - 5406580

60647