About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5398508_5401435_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5398508 - 5401435
Intron Length:
2928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
GCCACCTGCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GTTTCTCCACCT
Flanking Amino Acid:
HDEARKWSSKPVTVVNEAAE
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
49.2
-0
1.1
46.8
34.3
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
47.9
-0
2.1
73.74
43

Associated Gene:

Gene:
VCL
Ensembl Gene ID:
ENSAPLG00000009928
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010396
5345934 - 5406580
60647