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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5401643_5403850_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5401643 - 5403850
Intron Length:
2208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCCTG
5'SS Class:
major
3'SS Sequence:
TTGTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
ACTCACTGATGT
Flanking Amino Acid:
HREATKWSSKGNDIIAAAKR
Intron Amino Acid Position:
985

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.1
56.6
47.8
Major BPS
71.2
0.53
1
61
37.5
Major PPT
87.2
0.84
0.7
85.4
29.3
Minor 5ss
40.5
-1.1
3.3
56.5
47.7
Minor BPS
41.8
-0.5
2
57.84
44.4

Associated Gene:

Gene:
VCL
Ensembl Gene ID:
ENSAPLG00000009928
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010396
5345934 - 5406580
60647