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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5404779_5405433_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5404779 - 5405433
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
TNISDEESEQATEMLVHNAQ
Intron Amino Acid Position:
1088

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
VCL
Ensembl Gene ID:
ENSAPLG00000009928
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039245
5345934 - 5406580
60647
ENSAPLT00000010396
5345934 - 5406580
60647