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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5411158_5412397_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5411158 - 5412397
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TATACTCTCATT
Flanking Amino Acid:
QFKIQQLAISGLKVNRLDMY
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.8
76.2
39.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
89.8
0.89
0.7
88.4
28.7
Minor 5ss
32.1
-2
3.1
40.6
45.6
Minor BPS
47.5
-0.1
2
70.42
40.8

Associated Gene:

Gene:
AP3M1
Ensembl Gene ID:
ENSAPLG00000010488
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010954
5411057 - 5426060
15004