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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5412543_5413359_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5412543 - 5413359
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTGACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
TCTTTCCTGACA
Flanking Amino Acid:
GSYTFDPVTKVLTWDVGKIT
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
60.7
0.24
1.1
61
39.2
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
63.3
0.41
1.7
74.62
36.9

Associated Gene:

Gene:
AP3M1
Ensembl Gene ID:
ENSAPLG00000010488
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010954
5411057 - 5426060
15004