About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5414081_5414462_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5414081 - 5414462
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCGCTATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCTACTTACCA
Flanking Amino Acid:
GMPDLSLSFMNPRLLDDVSF
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.1
0.57
0.9
68
36.6
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
63.8
0.43
1.8
76.13
41.2

Associated Gene:

Gene:
AP3M1
Ensembl Gene ID:
ENSAPLG00000010488
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010954
5411057 - 5426060
15004