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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_5415834_5417433_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5415834 - 5417433
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATTACTGATTT
Flanking Amino Acid:
ILRSVVNSITGSSNVGDTLP
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
74.6
0.55
1
78.7
33.2
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
52.8
0.17
1.9
75.45
41

Associated Gene:

Gene:
AP3M1
Ensembl Gene ID:
ENSAPLG00000010488
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010954
5411057 - 5426060
15004