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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_545267_558555_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
545267 - 558555
Intron Length:
13289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTAGAT
U12 Branch Point Sequence:
AGATCTGCAGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
48.5
-0
1.4
46.4
47
Major PPT
78.8
0.65
0.9
69.2
41.8
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
42.2
-0.5
2.2
60.4
43

Associated Gene:

Gene:
SGMS1
Ensembl Gene ID:
ENSAPLG00000002477
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040702
545148 - 603178
58031